Coding

Part:BBa_K1218012

Designed by: Gordon Wade   Group: iGEM13_Stanford-Brown   (2013-08-29)


Ancestral CasA

This is an ancestrally predicted version of the CasA (Cse1) subgene from the CASCADE complex. CasA is responsible for PAM (protospacer adjacent motif) recognition. It works in conjunction with the rest of the CASCADE complex as a part of the CRISPR system. Together, the pieces of CASCADE work to recognize, bind to, and degrade foreign DNA. This ancestral version was predicted using the representative data from Pfam (PF09481) and PAML with the Lazarus suite.

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]


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Categories
Parameters
None